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· explore population structure.
· conduct principal components analysis (PCA).
· perform linkage disequilibrium analysis.
· perform linkage disequilibrium analysis.
· perform haplotype association analysis.
· conduct genome-wide association studies (GWAS).
· perform Hardy-Weinberg and Hardy-Weinberg equilibrium tests.
· convert between major and minor alleles.
· convert phasing to a binary matrix of 1/0’s for use in association studies 0531ecd6aa

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